Detailed information of SNP:
|
SNP ID:
sf0319435595(Gbrowse)
Chromosome: chr03 Position: 19435595 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 55.83% | 44.17% |
| All Indica | 790 | 86.46% | 13.54% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 209 | 70.33% | 29.67% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319435595 | C->T | INTERGENIC | None |