Detailed information of SNP:
|
SNP ID:
sf0319454643(Gbrowse)
Chromosome: chr03 Position: 19454643 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 62.04% | 37.96% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 491 | 7.54% | 92.46% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 62 | 4.84% | 95.16% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319454643 | A->C | INTERGENIC | None |