Detailed information of SNP:
|
SNP ID:
sf0319496854(Gbrowse)
Chromosome: chr03 Position: 19496854 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 57.70% | 42.30% |
| All Indica | 796 | 88.32% | 11.68% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319496854 | A->G | LOC_Os03g34240(LOC_Os03g34240.1) | Synonymous |