Detailed information of SNP:
|
SNP ID:
sf0319507793(Gbrowse)
Chromosome: chr03 Position: 19507793 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.42% | 39.58% |
| All Indica | 795 | 93.08% | 6.92% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319507793 | C->T | LOC_Os03g34270(LOC_Os03g34270.1) | Non-Synonymous SNP |