Detailed information of SNP:
|
SNP ID:
sf0319618478(Gbrowse)
Chromosome: chr03 Position: 19618478 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 62.96% | 37.04% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 473 | 8.46% | 91.54% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 320 | 1.88% | 98.12% |
| Tropical Japonica | 91 | 34.07% | 65.93% |
| Japonica Intermediate | 62 | 4.84% | 95.16% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319618478 | A->G | LOC_Os03g35380(LOC_Os03g35380.1) | Non-Synonymous SNP |