Detailed information of SNP:
|
SNP ID:
sf0319639778(Gbrowse)
Chromosome: chr03 Position: 19639778 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 61.68% | 38.32% |
| All Indica | 739 | 33.96% | 66.04% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 335 | 40.90% | 59.10% |
| Indica II | 207 | 28.02% | 71.98% |
| Indica Intermediate | 197 | 28.43% | 71.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319639778 | G->T | LOC_Os03g35420(LOC_Os03g35420.1) | Non-Synonymous SNP |