Detailed information of SNP:
|
SNP ID:
sf0319646122(Gbrowse)
Chromosome: chr03 Position: 19646122 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 87.05% | 12.95% |
| All Indica | 739 | 83.76% | 16.24% |
| All Japonica | 493 | 94.93% | 5.07% |
| Aus | 64 | 60.94% | 39.06% |
| Indica I | 348 | 84.20% | 15.80% |
| Indica II | 195 | 84.10% | 15.90% |
| Indica Intermediate | 196 | 82.65% | 17.35% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319646122 | A->G | LOC_Os03g35440(LOC_Os03g35440.1) | Synonymous |