Detailed information of SNP:
|
SNP ID:
sf0319673011(Gbrowse)
Chromosome: chr03 Position: 19673011 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 64.38% | 35.62% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 495 | 9.90% | 90.10% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319673011 | A->C | INTERGENIC | None |