Detailed information of SNP:
|
SNP ID:
sf0319677401(Gbrowse)
Chromosome: chr03 Position: 19677401 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1323 | 90.17% | 9.83% |
| All Indica | 712 | 84.27% | 15.73% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 322 | 85.40% | 14.60% |
| Indica II | 197 | 83.25% | 16.75% |
| Indica Intermediate | 193 | 83.42% | 16.58% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319677401 | C->T | INTERGENIC | None |