Detailed information of SNP:
|
SNP ID:
sf0319678758(Gbrowse)
Chromosome: chr03 Position: 19678758 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 59.60% | 40.40% |
| All Indica | 794 | 96.73% | 3.27% |
| All Japonica | 496 | 8.67% | 91.33% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319678758 | C->T | LOC_Os03g35500(LOC_Os03g35500.1) | Non-Synonymous SNP |