Detailed information of SNP:
|
SNP ID:
sf0319689029(Gbrowse)
Chromosome: chr03 Position: 19689029 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 96.79% | 3.21% |
| All Indica | 781 | 94.62% | 5.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 94.59% | 5.41% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 201 | 92.04% | 7.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319689029 | C->T | INTERGENIC | None |