Detailed information of SNP:
|
SNP ID:
sf0319744691(Gbrowse)
Chromosome: chr03 Position: 19744691 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 59.91% | 40.09% |
| All Indica | 792 | 92.93% | 7.07% |
| All Japonica | 488 | 6.76% | 93.24% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 371 | 92.45% | 7.55% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 329 | 2.74% | 97.26% |
| Tropical Japonica | 93 | 22.58% | 77.42% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319744691 | A->G | LOC_Os03g35650(LOC_Os03g35650.1) | INTRON |