Detailed information of SNP:
|
SNP ID:
sf0319747898(Gbrowse)
Chromosome: chr03 Position: 19747898 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 82.03% | 17.97% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 477 | 48.85% | 51.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 32.20% | 67.80% |
| Tropical Japonica | 90 | 87.78% | 12.22% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319747898 | A->G | INTERGENIC | None |