Detailed information of SNP:
|
SNP ID:
sf0319774310(Gbrowse)
Chromosome: chr03 Position: 19774310 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.53% | 37.47% |
| All Indica | 797 | 96.99% | 3.01% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319774310 | T->G | INTERGENIC | None |