Detailed information of SNP:
|
SNP ID:
sf0319781344(Gbrowse)
Chromosome: chr03 Position: 19781344 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 97.16% | 2.84% |
| All Indica | 752 | 94.95% | 5.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 96.92% | 3.08% |
| Indica II | 197 | 94.42% | 5.58% |
| Indica Intermediate | 198 | 91.92% | 8.08% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319781344 | C->T | INTERGENIC | None |