Detailed information of SNP:
|
SNP ID:
sf0319784011(Gbrowse)
Chromosome: chr03 Position: 19784011 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 97.05% | 2.95% |
| All Indica | 778 | 95.12% | 4.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 361 | 94.74% | 5.26% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319784011 | T->C | LOC_Os03g35720(LOC_Os03g35720.1) | INTRON |