Detailed information of SNP:
|
SNP ID:
sf0319792043(Gbrowse)
Chromosome: chr03 Position: 19792043 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 62.70% | 37.30% |
| All Indica | 797 | 96.86% | 3.14% |
| All Japonica | 495 | 6.26% | 93.74% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319792043 | T->A | INTERGENIC | None |