Detailed information of SNP:
|
SNP ID:
sf0319793504(Gbrowse)
Chromosome: chr03 Position: 19793504 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 57.59% | 42.41% |
| All Indica | 785 | 89.68% | 10.32% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 368 | 89.13% | 10.87% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319793504 | A->G | LOC_Os03g35730(LOC_Os03g35730.1) | Synonymous |