Detailed information of SNP:
|
SNP ID:
sf0319800078(Gbrowse)
Chromosome: chr03 Position: 19800078 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.64% | 39.36% |
| All Indica | 799 | 93.12% | 6.88% |
| All Japonica | 495 | 6.26% | 93.74% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319800078 | C->T | LOC_Os03g35740(LOC_Os03g35740.1) | SNPs that introduce stop codons |