Detailed information of SNP:
|
SNP ID:
sf0319831189(Gbrowse)
Chromosome: chr03 Position: 19831189 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 61.15% | 38.85% |
| All Indica | 794 | 95.34% | 4.66% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 371 | 95.42% | 4.58% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319831189 | G->T | INTERGENIC | None |