Detailed information of SNP:
|
SNP ID:
sf0319862157(Gbrowse)
Chromosome: chr03 Position: 19862157 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.05% | 36.95% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 496 | 5.85% | 94.15% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319862157 | G->A | INTERGENIC | None |