Detailed information of SNP:
|
SNP ID:
sf0319866735(Gbrowse)
Chromosome: chr03 Position: 19866735 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.69% | 37.31% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319866735 | T->C | INTERGENIC | None |