Detailed information of SNP:
|
SNP ID:
sf0319888498(Gbrowse)
Chromosome: chr03 Position: 19888498 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 96.29% | 3.71% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 456 | 89.04% | 10.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 84.36% | 15.64% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319888498 | C->A | LOC_Os03g35870(LOC_Os03g35870.1) | Non-Synonymous SNP |