Detailed information of SNP:
|
SNP ID:
sf0319908589(Gbrowse)
Chromosome: chr03 Position: 19908589 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.41% | 39.59% |
| All Indica | 797 | 92.97% | 7.03% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319908589 | G->A | INTERGENIC | None |