Detailed information of SNP:
|
SNP ID:
sf0319910938(Gbrowse)
Chromosome: chr03 Position: 19910938 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 64.62% | 35.38% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 496 | 8.87% | 91.13% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319910938 | G->C | INTERGENIC | None |