Detailed information of SNP:
|
SNP ID:
sf0319911750(Gbrowse)
Chromosome: chr03 Position: 19911750 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 59.83% | 40.17% |
| All Indica | 784 | 92.98% | 7.02% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 365 | 94.25% | 5.75% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319911750 | A->G | INTERGENIC | None |