Detailed information of SNP:
|
SNP ID:
sf0319921311(Gbrowse)
Chromosome: chr03 Position: 19921311 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 85.82% | 14.18% |
| All Indica | 777 | 75.93% | 24.07% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 364 | 82.14% | 17.86% |
| Indica II | 208 | 87.50% | 12.50% |
| Indica Intermediate | 205 | 53.17% | 46.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319921311 | G->C | INTERGENIC | None |