Detailed information of SNP:
|
SNP ID:
sf0319943110(Gbrowse)
Chromosome: chr03 Position: 19943110 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 90.65% | 9.35% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 470 | 77.87% | 22.13% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 313 | 92.97% | 7.03% |
| Tropical Japonica | 91 | 50.55% | 49.45% |
| Japonica Intermediate | 66 | 43.94% | 56.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319943110 | A->G | INTERGENIC | None |