Detailed information of SNP:
|
SNP ID:
sf0319973960(Gbrowse)
Chromosome: chr03 Position: 19973960 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.97% | 48.03% |
| All Indica | 799 | 82.23% | 17.77% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319973960 | C->T | INTERGENIC | None |