Detailed information of SNP:
|
SNP ID:
sf0319978731(Gbrowse)
Chromosome: chr03 Position: 19978731 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 96.27% | 3.73% |
| All Indica | 776 | 94.07% | 5.93% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 363 | 93.66% | 6.34% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319978731 | A->C | LOC_Os03g36020(LOC_Os03g36020.1) | Synonymous |