Detailed information of SNP:
|
SNP ID:
sf0320042177(Gbrowse)
Chromosome: chr03 Position: 20042177 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 92.81% | 7.19% |
| All Indica | 761 | 87.65% | 12.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 351 | 87.46% | 12.54% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 201 | 79.10% | 20.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320042177 | A->G | LOC_Os03g36130(LOC_Os03g36130.1) | Non-Synonymous SNP |