Detailed information of SNP:
|
SNP ID:
sf0320045194(Gbrowse)
Chromosome: chr03 Position: 20045194 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 55.86% | 44.14% |
| All Indica | 798 | 88.22% | 11.78% |
| All Japonica | 495 | 2.42% | 97.58% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320045194 | T->G | LOC_Os03g36130(LOC_Os03g36130.1) | UTR_5_PRIME |