Detailed information of SNP:
|
SNP ID:
sf0320045225(Gbrowse)
Chromosome: chr03 Position: 20045225 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.93% | 44.07% |
| All Indica | 797 | 88.58% | 11.42% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320045225 | A->G | LOC_Os03g36130(LOC_Os03g36130.1) | SNPs that introduce initiation codons |