Detailed information of SNP:
|
SNP ID:
sf0320066391(Gbrowse)
Chromosome: chr03 Position: 20066391 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.20% | 40.80% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320066391 | G->A | LOC_Os03g36170(LOC_Os03g36170.1) | Non-Synonymous SNP |