Detailed information of SNP:
|
SNP ID:
sf0320094809(Gbrowse)
Chromosome: chr03 Position: 20094809 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 60.38% | 39.62% |
| All Indica | 792 | 91.54% | 8.46% |
| All Japonica | 492 | 11.18% | 88.82% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 373 | 91.42% | 8.58% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 63 | 6.35% | 93.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320094809 | A->G | INTERGENIC | None |