Detailed information of SNP:
|
SNP ID:
sf0320126829(Gbrowse)
Chromosome: chr03 Position: 20126829 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 60.17% | 39.83% |
| All Indica | 796 | 91.33% | 8.67% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320126829 | A->C | INTERGENIC | None |