Detailed information of SNP:
|
SNP ID:
sf0320134843(Gbrowse)
Chromosome: chr03 Position: 20134843 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 57.16% | 42.84% |
| All Indica | 794 | 86.65% | 13.35% |
| All Japonica | 493 | 6.90% | 93.10% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 371 | 77.63% | 22.37% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 64 | 6.25% | 93.75% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320134843 | G->A | LOC_Os03g36300(LOC_Os03g36300.1) | Synonymous |