Detailed information of SNP:
|
SNP ID:
sf0320136193(Gbrowse)
Chromosome: chr03 Position: 20136193 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 55.78% | 44.22% |
| All Indica | 782 | 85.29% | 14.71% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 366 | 75.68% | 24.32% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 205 | 92.68% | 7.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320136193 | G->A | INTERGENIC | None |