Detailed information of SNP:
|
SNP ID:
sf0320149750(Gbrowse)
Chromosome: chr03 Position: 20149750 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 59.84% | 40.16% |
| All Indica | 774 | 92.12% | 7.88% |
| All Japonica | 496 | 6.85% | 93.15% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 356 | 86.52% | 13.48% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320149750 | T->C | LOC_Os03g36330(LOC_Os03g36330.1) | Synonymous |