Detailed information of SNP:
|
SNP ID:
sf0320151715(Gbrowse)
Chromosome: chr03 Position: 20151715 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 59.51% | 40.49% |
| All Indica | 774 | 91.86% | 8.14% |
| All Japonica | 496 | 7.46% | 92.54% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 356 | 89.04% | 10.96% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320151715 | A->G | LOC_Os03g36330(LOC_Os03g36330.1) | Synonymous |