Detailed information of SNP:
|
SNP ID:
sf0320151768(Gbrowse)
Chromosome: chr03 Position: 20151768 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.91% | 37.09% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320151768 | C->G | LOC_Os03g36330(LOC_Os03g36330.1) | Non-Synonymous SNP |