Detailed information of SNP:
|
SNP ID:
sf0320159781(Gbrowse)
Chromosome: chr03 Position: 20159781 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 59.57% | 40.43% |
| All Indica | 793 | 91.93% | 8.07% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 370 | 91.08% | 8.92% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320159781 | A->G | INTERGENIC | None |