Detailed information of SNP:
|
SNP ID:
sf0320173367(Gbrowse)
Chromosome: chr03 Position: 20173367 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 64.44% | 35.56% |
| All Indica | 788 | 40.10% | 59.90% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 369 | 46.07% | 53.93% |
| Indica II | 210 | 33.33% | 66.67% |
| Indica Intermediate | 209 | 36.36% | 63.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320173367 | C->T | INTERGENIC | None |