Detailed information of SNP:
|
SNP ID:
sf0320173591(Gbrowse)
Chromosome: chr03 Position: 20173591 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 60.71% | 39.29% |
| All Indica | 793 | 93.69% | 6.31% |
| All Japonica | 491 | 6.52% | 93.48% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 62 | 3.23% | 96.77% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320173591 | T->C | INTERGENIC | None |