Detailed information of SNP:
|
SNP ID:
sf0320218805(Gbrowse)
Chromosome: chr03 Position: 20218805 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 54.75% | 45.25% |
| All Indica | 791 | 83.82% | 16.18% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 371 | 83.56% | 16.44% |
| Indica II | 211 | 81.99% | 18.01% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320218805 | C->T | INTERGENIC | None |