Detailed information of SNP:
|
SNP ID:
sf0320451294(Gbrowse)
Chromosome: chr03 Position: 20451294 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 91.91% | 8.09% |
| All Indica | 779 | 89.35% | 10.65% |
| All Japonica | 496 | 94.35% | 5.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 93.78% | 6.22% |
| Indica II | 206 | 80.10% | 19.90% |
| Indica Intermediate | 203 | 90.64% | 9.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320451294 | G->A | INTERGENIC | None |