Detailed information of SNP:
|
SNP ID:
sf0320457915(Gbrowse)
Chromosome: chr03 Position: 20457915 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 94.34% | 5.66% |
| All Indica | 764 | 93.59% | 6.41% |
| All Japonica | 492 | 95.12% | 4.88% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 362 | 93.65% | 6.35% |
| Indica II | 203 | 95.07% | 4.93% |
| Indica Intermediate | 199 | 91.96% | 8.04% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320457915 | G->A | INTERGENIC | None |