Detailed information of SNP:
|
SNP ID:
sf0320460465(Gbrowse)
Chromosome: chr03 Position: 20460465 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 61.42% | 38.58% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 483 | 2.90% | 97.10% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 81 | 12.35% | 87.65% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320460465 | T->C | INTERGENIC | None |