Detailed information of SNP:
|
SNP ID:
sf0320461850(Gbrowse)
Chromosome: chr03 Position: 20461850 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1218 | 67.73% | 32.27% |
| All Indica | 622 | 41.32% | 58.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 49 | 69.39% | 30.61% |
| Indica I | 264 | 40.53% | 59.47% |
| Indica II | 186 | 41.40% | 58.60% |
| Indica Intermediate | 172 | 42.44% | 57.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320461850 | A->G | LOC_Os03g36880(LOC_Os03g36880.1) | INTRON |