Detailed information of SNP:
|
SNP ID:
sf0320506833(Gbrowse)
Chromosome: chr03 Position: 20506833 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 54.53% | 45.47% |
| All Indica | 796 | 83.92% | 16.08% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 372 | 81.99% | 18.01% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0320506833 | A->G | LOC_Os03g36980(LOC_Os03g36980.1) | INTRON |